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Score technology-stratified rCLR

Source: R/singlesample-technology-aware-scoring.R
score_tech_stratified_rclr.Rd

Score technology-stratified rCLR

Usage

score_tech_stratified_rclr(
  expr,
  meta,
  panel,
  technology_col = "technology",
  fit = NULL,
  train_expr = NULL,
  train_meta = NULL,
  pseudocount = NULL
)

Arguments

expr

Numeric matrix, samples x features.

meta

Data frame aligned to `expr`.

panel

Character vector of panel features.

technology_col

Column identifying technology class.

fit

Optional fit from `fit_tech_stratified_rclr()`.

train_expr

Optional training matrix when `fit` is NULL.

train_meta

Optional training metadata when `fit` is NULL.

pseudocount

Optional additive pseudocount before log transform.

Value

Numeric score vector.