Score a panel against a RIN-weighted frozen training reference profile.

Usage

score_rin_weighted_score(
  expr,
  meta,
  panel,
  rin_fit = NULL,
  train_expr = NULL,
  train_meta = NULL,
  rin_col = NULL,
  pseudocount = NULL
)

Arguments

expr: Numeric matrix, samples x features.
meta: Data frame aligned to `expr`.
panel: Character vector of panel features.
rin_fit: Optional fit from `fit_rin_weighted_reference()`.
train_expr: Optional training matrix used to fit `rin_fit`.
train_meta: Optional training metadata used with `train_expr`.
rin_col: Optional RNA-integrity-number column.
pseudocount: Optional additive pseudocount before log transform.