Score a panel against the dual hemolysis plus kit-stable denominator.
Source:R/singlesample-anchor-denoising.R
score_hemolysis_kit_dual_anchor.RdScore a panel against the dual hemolysis plus kit-stable denominator.
Usage
score_hemolysis_kit_dual_anchor(
expr,
meta,
panel,
dual_fit = NULL,
train_expr = NULL,
train_meta = NULL,
kit_col = NULL,
min_eval_anchors = 3L,
pseudocount = NULL,
...
)Arguments
- expr
Numeric matrix, samples x features.
- meta
Data frame aligned to `expr`.
- panel
Character vector of panel features.
- dual_fit
Optional fit from `fit_hemolysis_kit_dual_anchor()`.
- train_expr
Optional training matrix used to fit `dual_fit`.
- train_meta
Optional training metadata used with `train_expr`.
- kit_col
Optional kit column.
- min_eval_anchors
Minimum anchors required in evaluation data.
- pseudocount
Optional additive pseudocount before log transform.
- ...
Additional arguments passed to `fit_hemolysis_kit_dual_anchor()`.